Labshake search
Citations for Phase Genomics :
1 - 50 of 57 citations for Ephrin type A receptor 2 EphA2 Human HEK293 His since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2023Quote: ... Hi-C libraries were generated with 1.5 M human cells as input using Proximo Hi-C kits v4.0 (Phase Genomics, Seattle, WA) according to the manufacturer’s protocol with the following change ...
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bioRxiv - Genomics 2023Quote: ... Hi-C libraries using 1.5 M human cells as input were generated with Proximo Hi-C kits v4.0 (Phase Genomics, Seattle, WA) following the manufacturer’s protocol with the following modification ...
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bioRxiv - Genetics 2019Quote: A Hi-C library was constructed with the ProxiMeta Hi-C kit from Phase Genomics v 1.0 containing the enzyme Sau3A ...
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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breedingbioRxiv - Genomics 2020Quote: ... and a Hi-C library was prepared following the proximo Hi-C plant protocol (Phase Genomics). Both the Illumina paired-end and the Hi-C libraries were sequenced on an Illumina NextSeq 500 platform with the paired-end mode and read length of 150 bp.
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bioRxiv - Cancer Biology 2024Quote: ... Hi-C was performed using Phase Genomics Proximo Hi-C kits v4.0 (Phase genomics, Seattle, WA) according to the manufacturer’s instructions21 ...
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bioRxiv - Genomics 2020Quote: Hi-C was performed following the Phase Genomics Proximo Hi-C animal Kit (Phase Genomics, Seattle, WA). About 40-50 female third instar larvae were sliced with a razor blade to obtain about 80 mg of tissue ...
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bioRxiv - Genomics 2024Quote: ... a chromatin interaction (Hi-C) library was generated using Proximo Hi-C Library Prep Kit (Phase Genomics) with in vivo cross-linking in the Genomic Sciences Laboratory of the North Carolina State University (USA) ...
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bioRxiv - Plant Biology 2023Quote: Hi-C was performed based on the Proximo Hi-C kit (Microbe) (Phase Genomics, Seattle, WA, USA) according to the manufacturer’s protocol as previously described (Seidl et al. ...
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bioRxiv - Evolutionary Biology 2019Quote: ... We prepared a Hi-C library using the Proximo Hi-C kit from Phase Genomics (Seattle, WA, USA). We used ∼200 μg of liver from a second wild-caught animal and proceeded with library preparation following the protocol for animal tissues ...
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bioRxiv - Plant Biology 2020Quote: ... Hi-C libraries were constructed using the Proximo Hi-C plant kit following the manufacturer’s instructions (Phase Genomics) and sequenced on an Illumina HiSeq X Ten system with 2×150 bp mode at Nextomics Biosciences.
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bioRxiv - Plant Biology 2021Quote: ... The Hi-C library was prepared following the proximo Hi-C plant protocol (Phase Genomics, San Diego, CA, USA) and the libraries were sequenced to 116X depth on an Illumina platform with the paired-end mode and read length of 150 bp.
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bioRxiv - Genomics 2022Quote: ... library preparation for chromosome conformation capture (Hi-C) analyses used the Proximo Hi-C 2.0 Kit from Phase Genomics Inc ...
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bioRxiv - Genomics 2019Quote: ... Hi-C library creation was carried out with a Proximo™ Hi-C kit (Feb 2018) from Phase Genomics using the Proximo™ Hi-C Animal Protocol version 1.0 ...
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bioRxiv - Microbiology 2021Quote: The same fecal sample was used to generate a Hi-C library using the ProxiMeta Hi-C kit following the manufacturer’s protocol (Phase Genomics). The Hi-C method cross-links DNA molecules that are in close physical proximity within intact cells ...
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bioRxiv - Plant Biology 2020Quote: ... Hi-C libraries were constructed for the female parent following the Proximo™ Hi-C plant protocol (Phase Genomics, USA) and applied for sequencing on an Illumina HiSeq X platform (Illumina ...
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bioRxiv - Genomics 2020Quote: ... and Hi-C Library reads SRR10011257 (Phase Genomics) and SRR12507442 & SRR12507443 (Dovetail Genomics) ...
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bioRxiv - Genomics 2022Quote: ... Hi-C binning was provided by Phase Genomics using its internal pipeline with MetaBAT results for hybrid assemblies as a starting point ...
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bioRxiv - Genomics 2023Quote: ... A Hi-C Plant Kit (Phase Genomics, Seattle, WA) was used to create a proximity ligation library that included four restriction enzymes (DpnII ...
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bioRxiv - Genomics 2024Quote: ... PacBio Sequel II HiFi and Hi-C (Phase Genomics) data were assembled with Hifiasm v.0.16.1 (Cheng et al. ...
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bioRxiv - Genomics 2023Quote: Fresh leaf tissue (see above) was used to generate a Hi-C library with the Proximo Hi-C Plant Kit from Phase Genomics (v4.0 protocol). Input material was ground in a mortar and pestle under liquid N2 ...
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bioRxiv - Genomics 2021Quote: A Hi-C library was constructed from young leaves of 10B-620 using a Proximo Hi-C Plant Kit (Phase Genomics, Seattle, WA, USA). The library was sequenced by Illumina NextSeq500 ...
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bioRxiv - Genetics 2020Quote: ... Mycelium was collected by straining over double layer miracloth and 300 mg (fresh weight) was used as input for generating Hi-C sequencing libraries with the Proximo Hi-C kit (Microbe) (Phase Genomics, Seattle, WA, USA), according to manufacturer’s instructions ...
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bioRxiv - Microbiology 2021Quote: ... 300 mg (fresh weight) mycelium was used as input for generating Hi-C sequencing libraries with the Proximo Hi-C kit (Microbe) (Phase Genomics, Seattle, WA, USA), according to manufacturer instructions ...
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bioRxiv - Genomics 2022Quote: ... a Proximo Hi-C 2.0 Kit (Phase Genomics, WA, USA) was used to prepare the proximity ligation library and process it into an Illumina-compatible sequencing library ...
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bioRxiv - Genomics 2021Quote: The Proximo Hi-C genome scaffolding platform from Phase Genomics’(Seattle ...
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bioRxiv - Genetics 2020Quote: ... Phase Genomics™ Hi-C libraries were made by Phase genomics from males (n=2 ...
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bioRxiv - Genomics 2019Quote: A Sau3AI Hi-C library was prepared (Phase Genomics, Seattle WA) as follows ...
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bioRxiv - Genomics 2019Quote: ... (ii) Hi-C chromosome conformation captured reads sequencing by Phase genomics; (iii ...
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bioRxiv - Plant Biology 2022Quote: ... tabacum using the animal Proximo Hi-C kit (Phase Genomics, https://phasegenomics.com/) according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2020Quote: ... PacBio data used for genome assembly and Hi-C data from Phase Genomics used for construction of proximity map (PRJNA498060) ...
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bioRxiv - Genomics 2022Quote: ... library preparation and Hi-C sequencing was performed by Phase Genomics (WA, USA). Following the manufacturer’s instructions ...
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bioRxiv - Genomics 2023Quote: Chromatin conformation capture (Hi-C) scaffolding was performed by Phase Genomics (Seattle, USA) using the Proximo Hi-C 2.0 Kit ...
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bioRxiv - Genomics 2023Quote: ... and reverse-crosslinked using Proximo Hi-C Kit (Plant) v2.0 (Phase Genomics, Seattle, USA). The library was sequenced on a HiSeq4000 for ~300 M 150-bp paired-end sequencing.
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bioRxiv - Plant Biology 2024Quote: ... digitatus leaves using the Proximo Hi-C (Plant) Kit and protocol v4.0 (Phase Genomics) with three extra wash steps and 12 PCR amplification cycles ...
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bioRxiv - Plant Biology 2024Quote: ... curassavica leaves using the Proximo Hi-C Plant Kit (Phase Genomics, Seattle, WA, USA) and was sequenced on an Illumina MiSeq instrument (paired-end 2×75bp ...
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bioRxiv - Microbiology 2024Quote: Meta-Hi-C sequencing was performed using the ProxiMeta kit provided by Phase Genomics exactly as directed in the standard protocol ...
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bioRxiv - Genomics 2021Quote: A Proximo Hi-C library was prepared as described (Phase Genomics Inc. Seattle, WA, USA) and sequenced on an Illumina HiSeq 2500 system with paired-end 150 bp reads ...
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bioRxiv - Genomics 2023Quote: We used intact leaf material and the Proximo TM Hi-C kit (Phase Genomics, USA) to generate libraries for Hi-C sequencing ...
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bioRxiv - Genomics 2021Quote: ... Chromosome-scale scaffolds were created by using the Proximo Hi-C genome scaffolding platform (Phase Genomics) in a method similar to that described by Bickhart et al ...
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bioRxiv - Genomics 2020Quote: ... a HiC library was constructed with Proximo Hi-C (Plant) Kit (Phase Genomics, Seattle, WA, USA) and sequenced on HiSeqX (Illumina) ...
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bioRxiv - Genomics 2023Quote: ... The assembly was then scaffolded with Hi-C reads using the Proximo pipeline by Phase Genomics Ltd ...
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bioRxiv - Plant Biology 2019Quote: ... and then assembled into chromosome-scale scaffolds using Hi-C methods by Phase Genomics (Seattle, WA, USA). Scaffolding gaps were filled with PBJelly v13.10 (English et al ...
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bioRxiv - Genomics 2020Quote: ... scaffolding was accomplished using Proximity Guided Assembly (PGA) and Hi-C reads by Phase Genomics (Seattle, WA). Resulting scaffolds were polished and gap-filled using PBJelly ...
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bioRxiv - Genomics 2023Quote: ... Hi-C data were generated and used to scaffold the assembly by Phase Genomics (Seattle, WA, USA). Gaps between contigs in the scaffolded assembly were filled by TGS-GapCloser [61] using ONT DNA sequences ...
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bioRxiv - Genomics 2021Quote: ... Chromosome conformation was captured and a sequencing library prepared using a Microbe Proximo Hi-C Kit from Phase Genomics, according to the manufacturer’s ProxiMeta™ Hi-C Protocol (version 1.5 ...
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bioRxiv - Genomics 2023Quote: DNA was prepared using Proximo Hi-C kit (Animal) as recommended by the manufacturer (Phase Genomics, Seattle, WA, USA). Library preparation and sequencing were carried out at the UC Davis DNA Technologies Core and scaffolding with Proximo was performed by Phase Genomics (Supplementary Methods).
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bioRxiv - Genomics 2021Quote: ... Chromosomal level scaffolds were generated with the same DNA source using the ProximoTM Hi-C genome scaffolding software (Phase Genomics Inc) and finalized by alignment to the CanFam3.1 reference.
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bioRxiv - Plant Biology 2019Quote: ... A Hi-C library was constructed using 0.2 g of leaf tissue collected from newly emerged teff seedlings with the Proximo™ Hi-C Plant kit (Phase Genomics) following the manufacturer’s protocol ...
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bioRxiv - Genomics 2021Quote: ... A proximity ligation library was also prepared from the same sample using the ProxiMeta™ Hi-C kit from Phase Genomics, and the resulting 2×150 bp sequences were also downsampled to 100 million reads ...
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bioRxiv - Genomics 2023Quote: ... dark-treated leaf tissue samples were harvested and cross-linked with formaldehyde for library preparation and Hi-C sequencing by Phase Genomics, yielding 543 million PE reads (150 bp) ...