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Citations for Oxford Instruments :
1 - 50 of 63 citations for 9 Z 11 E 13 Z OCTADECATRIENOIC ACID since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Neuroscience 2023Quote: ... Synaptic ribbons could be counted manually using 3D (x-y-z axis) representations of each confocal z-stack with the microscopic image analysis software Imaris (Oxford Instruments, USA).
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bioRxiv - Cell Biology 2021Quote: ... Z-stacks were imported into Imaris 9.3 (Oxford Instruments) and cropped to generate 3D images of single nuclei ...
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bioRxiv - Cell Biology 2019Quote: ... Z-stacks were imported into Imaris 9.3 (Oxford Instruments) and cropped to generate 3D images of single nuclei ...
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bioRxiv - Developmental Biology 2024Quote: ... Z-stacks were analyzed using IMARIS 9.5 (Oxford Instruments) and ImageJ (version 1.53k ...
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bioRxiv - Developmental Biology 2023Quote: ... z-stack images were analyzed using ImarisViewer 9.9.1 (Oxford Instruments) and then used to manually quantify the presence or absence of estrella+ cells in the region of the typical eye (left and right ...
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bioRxiv - Developmental Biology 2021Quote: ... embryo z-stack images were quantified using Imaris Bitplane (Oxford Instruments). 3D surfaces were rendered based on nuclear DAPI-staining and the corresponding regions were used to quantify the fluorescence intensity of ERF ...
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bioRxiv - Developmental Biology 2020Quote: ... Embryo z-stack images were quantified using Imaris Bitplane (Oxford Instruments).
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bioRxiv - Cell Biology 2021Quote: ... Z-stack images were segmented using the Imaris software (Oxford Instruments) using the Surface module ...
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bioRxiv - Neuroscience 2023Quote: ... Maximum z-projection images were made using a Imaris (Oxford Instruments).
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bioRxiv - Developmental Biology 2023Quote: ... Collected 3D Z-stack images were processed using Imaris (Oxford Instruments) and individual cone cells segmented using Imaris Surface function ...
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bioRxiv - Immunology 2023Quote: ... Z-stacks were 3D reconstructed using the Imaris software (Oxford instruments). Cell membranes and virions were segmented as individual surfaces ...
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bioRxiv - Neuroscience 2024Quote: ... Each Z-stack image series was imported to Imaris Software (Oxford Instruments) and reconstructed to 3-dimensional structure for mitochondrial quantification with the spots tool in Imaris using the same threshold parameters (diameter ∼ 1.5 µm) ...
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bioRxiv - Neuroscience 2021Quote: ... we imported the z-stacks into Bitplane Imaris 9.3.1 (Oxford Instruments, Abingdon, UK) and converted them to 8-bit .ims files ...
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bioRxiv - Cell Biology 2021Quote: ... z-stack collections were analyzed with the Imaris 9.2.0 software (Oxford Instruments Group). Colocalisations were quantified using the Pearson overlap coefficient (Fiji software).
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bioRxiv - Animal Behavior and Cognition 2024Quote: ... Entire Z-stack files were transferred to Imaris (Oxford Instruments, Abingdon, United Kingdom) where images were 3D rendered ...
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bioRxiv - Cell Biology 2024Quote: Confocal z-stack images were imported into Imaris 9.7.0 (Oxford Instruments, RRID: SCR_007370), where reconstructions of individual astrocytes or microglia cells were completed with the software tracing tools ...
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bioRxiv - Developmental Biology 2021Quote: ... Z-projections were generated in the Fiji image processing software and Imaris (Oxford Instruments).
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Phosphoproteomics of cellular mechanosensing reveals NFATC4 as a regulator of myofibroblast activitybioRxiv - Systems Biology 2023Quote: ... The confocal Z-stacks were also imported into Imaris software (Version 9.9.1, Oxford Instruments) for 3D visualization and nucleus number quantification ...
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bioRxiv - Cell Biology 2023Quote: ... confocal z-stacks were 3D reconstructed using the Imaris 9.1 software (Bitplane/Oxford Instruments) and either the volume reconstruction and clipping planes or orthogonal sections were used to visualize and explore the 3D structure of the organoids.
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bioRxiv - Neuroscience 2023Quote: ... Confocal z-stacks were analyzed in three dimensions (3D) using Imaris software (Oxford Instruments). First ...
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bioRxiv - Microbiology 2023Quote: ... Z-series were collected and reconstructed using Imaris 10.0 (Oxford Instruments, Abingdon, United Kingdom). Cell count analyses and visualizations were performed using the isosurface generation function in Imaris.
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bioRxiv - Microbiology 2024Quote: ... The resulting Z-stack was reconstructed and rendered in 3D using Imaris software (Oxford Instruments).
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bioRxiv - Cell Biology 2023Quote: ... 16-bit z-stacks were used to build 3D structures with Imaris 10.0.1 (Oxford Instruments) software ...
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bioRxiv - Cell Biology 2020Quote: ... Representative rendered images of the invaginations (x-z plane) were visualized with IMARIS software (Oxford Instruments).
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bioRxiv - Cancer Biology 2022Quote: ... Z-stacks were then imported to Imaris viewer version 9.8 (Bitplane, Imaris, Oxford Instruments, MA, USA) to obtain 3D images ...
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bioRxiv - Neuroscience 2021Quote: ... Z-stacks of images were processed and 3D reconstructed with Imaris software (version 9.3.1, Oxford Instruments). Photoshop CC and Illustrator CC (Adobe ...
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bioRxiv - Developmental Biology 2023Quote: ... edited and stacked in the Z-axis by the built-in function of Imaris (OXFORD Instruments).
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bioRxiv - Cell Biology 2023Quote: ... Images were acquired as a Z-stack and analyzed with Imaris software (version 9.5, Oxford Instruments) and HP Z8 workstation ...
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bioRxiv - Microbiology 2020Quote: ... a 3D volume of infected cells was reconstructed from acquired z-stacks using Imaris software (Oxford Instruments). The background was subtracted and individual IN.mScarlet signals were automatically detected using the spot detector Imaris module ...
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bioRxiv - Neuroscience 2024Quote: ... 3D visualization of high-resolution Z-stacks was performed using Imaris software version 7.7.2 (Bitplane, Oxford Instruments). Vascular segments presumed to belong to a PCV branch network were identified based on the evaluation of vascular structure from the obtained stacks ...
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bioRxiv - Bioengineering 2021Quote: ... Z-scans were obtained using an Andor Multi-model Fast Confocal Microscope System Dragonfly (Oxford Instruments, Abingdon, UK). Images were then analyzed using ImageJ software (National Institute of Health ...
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bioRxiv - Neuroscience 2022Quote: Neuronal morphology was extracted from confocal z stacks by 3D segmentation in Imaris software (Oxford Instruments, Zurich, Switzerland) as previously described [52] ...
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bioRxiv - Neuroscience 2022Quote: ... 3D reconstructions were performed using 0.5µm z-stacks taken with a 63x oil objective and then rendered with Imaris software (Oxford Instruments). EAAT1 immunolabeling for quantification of knockdown in brain tissue was done using ImageJ to select GFAP+GFP+ area and measure EAAT1 intensity within that area.
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bioRxiv - Cancer Biology 2022Quote: ... using a 25X water lens and Z-stacks (40-150 µm) were reconstructed using Imaris Imaging software (Oxford Instruments).
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bioRxiv - Cancer Biology 2022Quote: ... using a 25X water lens and Z-stacks (40-150 µm) were reconstructed using Imaris Imaging software (Oxford Instruments).
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bioRxiv - Bioengineering 2023Quote: ... confocal z-stacks imaging data were used to run the Spot Detection function in Imaris 9.5 software (Oxford Instruments). The estimated XY and Z diameter of T cells was set to 5 µm and 10 µm ...
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bioRxiv - Bioengineering 2022Quote: ... Z-stacks were converted into TIFF files using Zen Black (Zeiss) or Imaris software (v9.1, Bitplane, Oxford Instruments, Zurich, Switzerland).
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bioRxiv - Neuroscience 2022Quote: Microscopy was performed using a Zeiss LSM880 confocal system and fluorescent Z- stack images were quantified using IMARIS (Oxford Instruments).
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bioRxiv - Neuroscience 2023Quote: ... Z-stack images were acquired and analyzed offline in ImageJ/FIJI (Schindelin et al., 2012) or Imaris 9.8 (Oxford Instruments). Images used for quantification between genotypes were acquired using the same exposure times ...
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bioRxiv - Bioengineering 2020Quote: ... Three-dimensional (XYZ) Z-stacks were converted into TIFF files using Zen or Imaris software (v9.1, Bitplane – Oxford Instruments, Zurich, Switzerland).
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bioRxiv - Genetics 2020Quote: ... 3D reconstructions of the POU6F2-positive cells were made from z-stacks of confocal images using the Imaris (v9.2, Bitplane, Oxford Instruments, Switzerland). The 3D reconstructions can be rotated 90° to identify the sublaminae distribution of the ganglion cell dendrites (Figure 1).
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bioRxiv - Neuroscience 2022Quote: ... by acquiring 5 μm deep (10 z-steps) stacks of multiple overlapping fields and stitching them together in Imaris Stitcher (Oxford Instruments). Stitched images were imported into Imaris (Oxford Instruments) ...
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bioRxiv - Cell Biology 2023Quote: SR-SIM z-stacks were analyzed with the 3D rendering and quantitation capabilities of the program Imaris (Oxford Instruments, United Kingdom). A single channel (green autofluorescence ...
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bioRxiv - Developmental Biology 2023Quote: ... Imaging was performed with a Zeiss LSM900 Inverted Laser Scanning Confocal Microscope and the confocal Z-stacks were processed with the Imaris software (Oxford Instruments) to generate surfaces that represent the original disc volume 27 ...
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bioRxiv - Bioengineering 2024Quote: ... Z-stacks were converted into TIFF files or 3D images using Zen or Imaris software (v9.1, Bitplane, Oxford Instruments, Zurich, Switzerland). To quantify sprout density and length in the scaffolds ...
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bioRxiv - Biophysics 2023Quote: 3D reconstruction of z-stacks and NanoCT images was performed in Imaris (software version 9.7.2, Bitplane, an Oxford Instruments company, Belfast, UK). Cell segmentation in multi-photon 3D stacks and time-lapse 3D images was automatically performed using Imaris ...
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bioRxiv - Biophysics 2021Quote: ... 488- and 641-nm laser lines (Coherent) and an iXon Ultra 888 EMCCD camera (1024×1024 pixels, 13×13 μm pixel size, Andor, Oxford Instruments). z-stacks were acquired with a Δz interval of 0.5 μm.
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bioRxiv - Cell Biology 2021Quote: ... 488- and 561-nm Sapphire laser lines (Coherent) and an iXon Ultra 888 EMCCD camera (1024×1024 pixels, 13×13 μm pixel size, Andor, Oxford Instruments), resulting in an image pixel size of 65 nm ...
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bioRxiv - Cell Biology 2022Quote: ... 488-561- and 641-nm laser lines (Coherent) and an iXon Ultra 888 EMCCD camera (1024×1024 pixels, 13×13 μm pixel size, Andor, Oxford Instruments) resulting in an image pixel size of 65 nm ...
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bioRxiv - Cell Biology 2021Quote: ... Images were then opened in Imaris 9 (Oxford Instruments) and used to do the following quantifications ...