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Citations for Illumina :
1 - 50 of 586 citations for Tumor Protein Translationally Controlled 1 TPT1 Antibody HRP since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Pathology 2022Quote: ... TruSight Tumor 15 (Illumina, USA), and in-house pyrosequencing [43] ...
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bioRxiv - Cancer Biology 2019Quote: ... For tumor cells (sequenced by Illumina HiSeq 2500), genes with detected expression in at least 5 cells were included and cells with either less than 600 genes and 1500 UMI or more than 4000 genes and 20000 UMI were excluded ...
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bioRxiv - Genomics 2020Quote: ... The quality-controlled library was sequenced by Illumina NovaSeq 6000 to yield 5.10 Gb (∼75x coverage ...
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bioRxiv - Genetics 2020Quote: Manta (v0.23.1, as part of Illumina’s Tumor Normal Application v2.0.0) was run for somatic structural variant calling.
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bioRxiv - Cancer Biology 2021Quote: Library preparation was carried out using the TruSight Tumor 170 Assay (Illumina) following manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: Tumor DNA (250 ng) was analyzed using Infinium MethylationEPIC BeadChip arrays (Illumina). Raw data (idat files ...
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bioRxiv - Cancer Biology 2020Quote: ... 20 tumor-normal pairs were sequenced using the Truseq DNA kit (40Mb; (Illumina)) on the NovaSeq (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... Tumor samples were sequenced on the NovaSeq 6000 (Illumina, San Diego, CA, USA). FastQ files were aligned to the human genome and raw gene counts were determined ...
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bioRxiv - Neuroscience 2024Quote: ... The sequencing process was entirely controlled by data collection software provided by Illumina, and the sequencing result data was analyzed in real-time ...
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bioRxiv - Cancer Biology 2024Quote: ... The sequencing process was controlled by the data collection software provided by Illumina that performed real-time data analyses.
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bioRxiv - Immunology 2024Quote: ... Tumor-specific structural variants (SVs) were identified using the manta software (https://github.com/Illumina/manta/blob/mater/docs/userGuide/README.md#introduction).
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing of paired tumor and normal libraries was performed on Illumina HiSeqX or NovaSeq6000 (Illumina) with 150 bp paired-end reads ...
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bioRxiv - Genomics 2023Quote: Illumina germline and tumor sequencing libraries were prepared using the TruSeq DNA PCR-Free kit (Illumina) for all samples ...
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bioRxiv - Cancer Biology 2023Quote: ... The pooled sequencing library was then quality controlled and sequenced on a NovaSeq 6000 instrument (Illumina). Paired-end and dual-indexed reads were generated in the format of 2 x 28bp with an additional 2 x 8bp for index sequences.
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bioRxiv - Cancer Biology 2020Quote: ... mRNA libraries for A/E9a;NRASG12D tumor cells were generated using TruSeq RNA Library Prep kit (Illumina) and sequenced in a HiSeq2000 sequencer SE50bp (Illumina) ...
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bioRxiv - Genomics 2022Quote: ... WGS of tumor-normal pairs was performed on the HiSeq X-Ten platform (Illumina, San Diego, USA), yielding paired-end reads of 2×150 bp length ...
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bioRxiv - Cancer Biology 2023Quote: ... single cell RNAseq analysis on tumor tissues were conducted on an untreated patient biopsy (Illumina HiSeq 2500) and a patient biopsy at acquired resistance (unmatched ...
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bioRxiv - Cancer Biology 2020Quote: ... mRNA libraries for A/E9a;NRASG12D;Ifnar1-/- tumor cells were generated using TruSeq RNA Library Prep kit (Illumina) and sequenced in a HiSeq2500 sequencer PE50bp (Illumina) ...
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bioRxiv - Cancer Biology 2022Quote: CLS performed next-generation sequencing on genomic DNA from FFPE tumor samples using the NextSeq platform (Illumina, Inc.). Here ...
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bioRxiv - Cancer Biology 2022Quote: mRNA libraries of the mouse melanoma tumor (n = 12) samples were prepared and sequenced using the HiSeq 2000 (Illumina). RNAseq data were processed by pyflow-RNAseq (Tang ...
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bioRxiv - Neuroscience 2023Quote: ... Libraries were quality controlled with Agilent Bioanalyzer High Sensitivity dsDNA chips and sequenced on a NovaSeq 6000 System (Illumina) at a sequencing depth of a minimum of 60,000 reads per Visium spot ...
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bioRxiv - Cancer Biology 2019Quote: cDNA libraries from tumor total RNA were prepared by the MIT BioMicro Center using the Neoprep library preparation system (Illumina) with indexed adaptor sequences and polyA selection ...
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bioRxiv - Cancer Biology 2021Quote: ... Tumor samples were sub-classified into four subgroups using genome-wide DNA methylome analysis (Illumina Methylation EPIC 850K bead arrays) as previously described.17 Normal cerebellum specimens were obtained at autopsy ...
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bioRxiv - Genetics 2021Quote: ... A representative set of somatic mutations were validated by Sanger sequencing or by processing micro-dissected material from the adenomas with the TruSight Tumor 26 Kit (Illumina).
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bioRxiv - Cancer Biology 2020Quote: ... Parental and prostate tumor-passaged chromosomal genomic DNA were sequenced following the standard Next Generation Sequencing NovaSeq 2×100 protocol (Illumina) and aligned against the parental LT2 and associated stable pSLT reference sequences (NCBI ...
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bioRxiv - Physiology 2020Quote: We prepared libraries using DNA extracted from the tumor tissue and buffy coat with the TruSeq Nano DNA Library Prep Kit (Illumina). Paired-end (2 × 75 bp ...
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bioRxiv - Cancer Biology 2021Quote: ... 9 samples with DNA >40kbp were concurrently sequenced using PacBio and Illumina and the remaining 13 tumor samples were sequenced by Illumina WGS only ...
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bioRxiv - Cancer Biology 2022Quote: ... included in the TGCA-PAAD project and with a follow up and a transcriptome profiling of their primary tumors by Illumina sequencing were downloaded from the Genomic Data Commons website as clinical files and FPKM transcriptome-sequencing files ...
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were sequenced as paired-end 101 bp (tumoroid samples) or paired-end 81 bp (original tumor tissues) reads on a NovaSeq 6000 (Illumina) platform at ~30M reads/sample ...
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bioRxiv - Genomics 2019Quote: ... Libraries were quality-controlled prior to sequencing based on Agilent 2100 Bioanalyzer profiles and normalized using the KAPA Library Quantification Kit (Illumina). Libraries were sequenced on the Illumina NextSeq500 platform using paired-end 43bp mode with 15 million reads per sample for pooled libraries and paired-end 75bp mode with 1-3 million reads per sample for single-cell and single-nucleus libraries.
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bioRxiv - Genomics 2021Quote: ... Libraries were quality-controlled prior to sequencing using Agilent 2100 Bioanalyzer profiles and normalized using the KAPA Library Quantification Kit (Illumina). The libraries were sequenced using Illumina NextSeq500 platform and sequenced to a depth of around 10 million reads per sample.
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bioRxiv - Molecular Biology 2023Quote: ... Purified libraries were controlled by capillary electrophoresis (LabChip - Perkin) and quantitated by qPCR (KAPA Library Quantification Kits Illumina Platforms - Roche). Pooled libraries (12 pM ...
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bioRxiv - Cancer Biology 2019Quote: We assessed genome-wide DNA methylation in seven tumor samples with the Illumina Methylation EPIC microarray (Illumina, San Diego, CA, USA). DNA methylation assays were performed as per the standard manufacturer’s protocol by MWG (Aros – Denmark) ...
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bioRxiv - Cancer Biology 2022Quote: ... Short-read RNA sequencing and library preparations for tumors were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Genomics 2020Quote: ... we sequenced matching tumor and normal samples from four patients using the Illumina MiSeq or NextSeq platform (Illumina, San Diego, CA, USA) (Additional File 2 ...
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bioRxiv - Genomics 2020Quote: ... Only tumors with data available for all three data levels (gene expression, copy number, and methylation as measured by Illumina HumanMethylation450 arrays) were included ...
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bioRxiv - Genomics 2020Quote: ... Plasma and tumor DNA libraries were sequenced using paired-end 50 bp reads generated on the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... Short-read whole-genome sequencing and library preparations for tumors and matched germline control were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Immunology 2024Quote: ... TRB sequencing was performed on pools of libraries from 11 - 15 tumor or skin samples on the Illumina MiSeq platform using a v3 150-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility (Seattle ...
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bioRxiv - Microbiology 2023Quote: ... and the residual mRNA was quality controlled and converted to the libraries that were sequenced on a NovaSeq 6000 (Illumina, San Diego, CA, USA) on a v1.5 S4_300 kit in XP mode ...
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bioRxiv - Cancer Biology 2021Quote: ... Whole-genome sequencing and library preparations for tumors and matched germline controls were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA or NEBNext, NEB). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Cancer Biology 2023Quote: ... The library preparation for bulk tumors and cell lines was generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer’s instructions (Illumina ...
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bioRxiv - Plant Biology 2023Quote: The prediction of protein-coding potential for transcripts generated from Illumina and SMRT data was conducted by integrating CPC2 v0.1 ...
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bioRxiv - Molecular Biology 2023Quote: ... and cell surface protein libraries were sequenced on the NextSeq 550 System (Illumina).
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bioRxiv - Immunology 2023Quote: ... specifically by % protein coding genes and were sequenced on one lane of NovaSeq6000 S4 PE100 (Illumina, Cat. No. 20028313). Reads were aligned to the mouse genome GRCm38 and quantified using the STAR aligner software version 2.7.2b ...
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bioRxiv - Immunology 2024Quote: ... Gene expression and surface protein libraries were generated using the Chromium Next GEM Single Cell 3 ’Reagent Kits v3.1 and sequenced by Illumina MiSeq or NextSeq2000 ...
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bioRxiv - Cancer Biology 2022Quote: ... ScRNA-seq libraries were prepared using the Next GEM Chromium single cell 3′ reagent kits V3.1 with feature barcode technology for cell surface protein (10x genomics) and sequenced using NextSeq 500 high output kits and Novaseq S4 PE100 kits (Illumina). scRNA-Seq data after standard quality control was aligned to the reference genome (mm10 ...
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bioRxiv - Genomics 2023Quote: ... All libraries were pooled and subjected to paired-end 75 bp sequencing (paired- end 76 nt reads with the first 1 nt of Read 1 and the last 1 nt of Read 2 trimmed) using the NextSeq500 system (Illumina, CA, USA). For each library ...
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bioRxiv - Microbiology 2023Quote: ... 1 μl of forward and 1 μl of reverse 25 μM PCR primers (Illumina), and 0.5 μl of Phusion high-fidelity DNA polymerase (New England Biolabs) ...
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bioRxiv - Neuroscience 2023Quote: ... collected with the magnet and resuspended in 24ul of Tagmentation Mix (1:1 Illumina 2× Tagmentation buffer ...