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Citations for Illumina :
1 - 33 of 33 citations for Somatostatin Tumor Inhibiting Analog since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Pathology 2022Quote: ... TruSight Tumor 15 (Illumina, USA), and in-house pyrosequencing [43] ...
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bioRxiv - Cancer Biology 2019Quote: ... For tumor cells (sequenced by Illumina HiSeq 2500), genes with detected expression in at least 5 cells were included and cells with either less than 600 genes and 1500 UMI or more than 4000 genes and 20000 UMI were excluded ...
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bioRxiv - Genetics 2020Quote: Manta (v0.23.1, as part of Illumina’s Tumor Normal Application v2.0.0) was run for somatic structural variant calling.
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bioRxiv - Cancer Biology 2021Quote: Library preparation was carried out using the TruSight Tumor 170 Assay (Illumina) following manufacturer’s instructions ...
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bioRxiv - Cancer Biology 2023Quote: Tumor DNA (250 ng) was analyzed using Infinium MethylationEPIC BeadChip arrays (Illumina). Raw data (idat files ...
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bioRxiv - Cancer Biology 2020Quote: ... 20 tumor-normal pairs were sequenced using the Truseq DNA kit (40Mb; (Illumina)) on the NovaSeq (Illumina ...
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bioRxiv - Cancer Biology 2023Quote: ... Tumor samples were sequenced on the NovaSeq 6000 (Illumina, San Diego, CA, USA). FastQ files were aligned to the human genome and raw gene counts were determined ...
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bioRxiv - Immunology 2024Quote: ... Tumor-specific structural variants (SVs) were identified using the manta software (https://github.com/Illumina/manta/blob/mater/docs/userGuide/README.md#introduction).
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bioRxiv - Cancer Biology 2024Quote: ... Sequencing of paired tumor and normal libraries was performed on Illumina HiSeqX or NovaSeq6000 (Illumina) with 150 bp paired-end reads ...
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bioRxiv - Genomics 2023Quote: Illumina germline and tumor sequencing libraries were prepared using the TruSeq DNA PCR-Free kit (Illumina) for all samples ...
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bioRxiv - Cancer Biology 2020Quote: ... mRNA libraries for A/E9a;NRASG12D tumor cells were generated using TruSeq RNA Library Prep kit (Illumina) and sequenced in a HiSeq2000 sequencer SE50bp (Illumina) ...
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bioRxiv - Genomics 2022Quote: ... WGS of tumor-normal pairs was performed on the HiSeq X-Ten platform (Illumina, San Diego, USA), yielding paired-end reads of 2×150 bp length ...
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bioRxiv - Cancer Biology 2023Quote: ... single cell RNAseq analysis on tumor tissues were conducted on an untreated patient biopsy (Illumina HiSeq 2500) and a patient biopsy at acquired resistance (unmatched ...
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bioRxiv - Cancer Biology 2020Quote: ... mRNA libraries for A/E9a;NRASG12D;Ifnar1-/- tumor cells were generated using TruSeq RNA Library Prep kit (Illumina) and sequenced in a HiSeq2500 sequencer PE50bp (Illumina) ...
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bioRxiv - Cancer Biology 2022Quote: CLS performed next-generation sequencing on genomic DNA from FFPE tumor samples using the NextSeq platform (Illumina, Inc.). Here ...
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bioRxiv - Cancer Biology 2022Quote: mRNA libraries of the mouse melanoma tumor (n = 12) samples were prepared and sequenced using the HiSeq 2000 (Illumina). RNAseq data were processed by pyflow-RNAseq (Tang ...
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bioRxiv - Cancer Biology 2019Quote: cDNA libraries from tumor total RNA were prepared by the MIT BioMicro Center using the Neoprep library preparation system (Illumina) with indexed adaptor sequences and polyA selection ...
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bioRxiv - Cancer Biology 2021Quote: ... Tumor samples were sub-classified into four subgroups using genome-wide DNA methylome analysis (Illumina Methylation EPIC 850K bead arrays) as previously described.17 Normal cerebellum specimens were obtained at autopsy ...
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bioRxiv - Genetics 2021Quote: ... A representative set of somatic mutations were validated by Sanger sequencing or by processing micro-dissected material from the adenomas with the TruSight Tumor 26 Kit (Illumina).
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bioRxiv - Cancer Biology 2020Quote: ... Parental and prostate tumor-passaged chromosomal genomic DNA were sequenced following the standard Next Generation Sequencing NovaSeq 2×100 protocol (Illumina) and aligned against the parental LT2 and associated stable pSLT reference sequences (NCBI ...
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bioRxiv - Physiology 2020Quote: We prepared libraries using DNA extracted from the tumor tissue and buffy coat with the TruSeq Nano DNA Library Prep Kit (Illumina). Paired-end (2 × 75 bp ...
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bioRxiv - Cancer Biology 2021Quote: ... 9 samples with DNA >40kbp were concurrently sequenced using PacBio and Illumina and the remaining 13 tumor samples were sequenced by Illumina WGS only ...
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bioRxiv - Cancer Biology 2022Quote: ... included in the TGCA-PAAD project and with a follow up and a transcriptome profiling of their primary tumors by Illumina sequencing were downloaded from the Genomic Data Commons website as clinical files and FPKM transcriptome-sequencing files ...
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bioRxiv - Cancer Biology 2022Quote: ... Libraries were sequenced as paired-end 101 bp (tumoroid samples) or paired-end 81 bp (original tumor tissues) reads on a NovaSeq 6000 (Illumina) platform at ~30M reads/sample ...
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bioRxiv - Cancer Biology 2019Quote: We assessed genome-wide DNA methylation in seven tumor samples with the Illumina Methylation EPIC microarray (Illumina, San Diego, CA, USA). DNA methylation assays were performed as per the standard manufacturer’s protocol by MWG (Aros – Denmark) ...
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bioRxiv - Cancer Biology 2022Quote: ... Short-read RNA sequencing and library preparations for tumors were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Genomics 2020Quote: ... we sequenced matching tumor and normal samples from four patients using the Illumina MiSeq or NextSeq platform (Illumina, San Diego, CA, USA) (Additional File 2 ...
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bioRxiv - Genomics 2020Quote: ... Only tumors with data available for all three data levels (gene expression, copy number, and methylation as measured by Illumina HumanMethylation450 arrays) were included ...
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bioRxiv - Genomics 2020Quote: ... Plasma and tumor DNA libraries were sequenced using paired-end 50 bp reads generated on the NovaSeq 6000 Sequencing System (Illumina, San Diego, CA).
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bioRxiv - Cancer Biology 2022Quote: ... Short-read whole-genome sequencing and library preparations for tumors and matched germline control were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Immunology 2024Quote: ... TRB sequencing was performed on pools of libraries from 11 - 15 tumor or skin samples on the Illumina MiSeq platform using a v3 150-cycle kit (Illumina, San Diego, CA) in the FHCC Genomics Core Facility (Seattle ...
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bioRxiv - Cancer Biology 2021Quote: ... Whole-genome sequencing and library preparations for tumors and matched germline controls were performed according to the manufacturer’s instructions (Illumina, San Diego, CA, USA or NEBNext, NEB). The quality of the libraries was assessed using a Bioanalyzer (Agilent ...
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bioRxiv - Cancer Biology 2023Quote: ... The library preparation for bulk tumors and cell lines was generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer’s instructions (Illumina ...