Labshake search
Citations for Illumina :
1 - 50 of 1592 citations for Methyl CpG binding protein 2 MECP2 Human HEK293 His since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
-
bioRxiv - Molecular Biology 2023Quote: ... Genome-wide DNA methylation was analysed on 850000 CpGs with the Infinium Human MethylationEPIC Kit (Illumina) according to the manufacturer’s instructions.
-
bioRxiv - Genomics 2023Quote: ... and Hi-C (Illumina NovaSeq 6000, 2×150bp) for chromosome-level scaffolding (Fig ...
-
bioRxiv - Molecular Biology 2023Quote: ... CpG methylation of 485,577 CpGs was determined by the Illumina Infinium HumanMethylation450 BeadChip (Illumina Inc., San Diego, CA) and data processed by the R package “sesame” ...
-
bioRxiv - Molecular Biology 2023Quote: ... as each clock was developed from a different pool of CpGs (e.g. the pan-tissue clock was developed from a pool of ∼21,000 CpGs common to all Illumina HumanMethylation arrays ...
-
bioRxiv - Genomics 2021Quote: ... and ligated to custom CpG-free annealed adapters (Oligo 3 - Custom CpG-free P7 adapter and Oligo 4 - Custom CpG-free P5 adapter; annealed according to the standard Illumina protocol). The adapter-ligated gDNA was purified and amplified in 20 reactions using KAPA HiFi master mix (Roche ...
-
bioRxiv - Genomics 2021Quote: We downloaded publicly-available Hi-C data from human prefrontal cortex tissue23,24 (Illumina HiSeq 2000 paired-end raw sequence reads ...
-
bioRxiv - Genetics 2021Quote: ... DNAm was then measured at 485,577 CpG sites across the genome using the Illumina Infinium Human Methylation 450K BeadChip microarray (Illumina, San Diego, CA). We received two versions of the DNAm data ...
-
bioRxiv - Cancer Biology 2023Quote: Metadata for the CpG probes were collected from Illumina’s annotation of HumanMethhylation450 BeadChip ...
-
bioRxiv - Molecular Biology 2020Quote: ... We obtained the genomic annotation of these CpGs from Illumina’s EPIC manifest ...
-
bioRxiv - Cancer Biology 2022Quote: ... Hi-C libraries were sequenced 2×150bp on a NovaSeq 6000 instrument (Illumina). Juicer were used to process raw reads and generate Hi-C contact matrices (.hic files) ...
-
bioRxiv - Genomics 2022Quote: ... we mapped CpG sites to the nearest genes using annotations released by Illumina. For proteomics ...
-
bioRxiv - Cancer Biology 2023Quote: ... CpG probes located in promoters of genes were extracted (“TSS200” in the Illumina Infinium Human-Methylation annotation file) ...
-
bioRxiv - Genomics 2022Quote: ... Those CpG-sites present on both the IlluminaHumanMethylation450 and MethylationEPIC arrays (as per Illumina Infinium MethylationEPIC v1.0 B4 CpG Manifest ...
-
bioRxiv - Genomics 2019Quote: ... Hi-C libraries were sequenced on a NextSeq 550 apparatus (2 × 75 bp, paired-end Illumina NextSeq with the first ten bases acting as barcodes ...
-
bioRxiv - Evolutionary Biology 2020Quote: ... Hi-C libraries were sequenced on a NextSeq 550 sequencer (2×75 bp, paired-end Illumina NextSeq with the first ten bases acting as barcodes50).
-
bioRxiv - Systems Biology 2024Quote: ... according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina) for the second read ...
-
bioRxiv - Developmental Biology 2021Quote: ... Paired-end 2 x 75 bp NSQ 500/550 Hi Output KT v2.5 −75 CYS (Illumina, 20024906) was performed for RNA-seq libraries on an Illumina Nextseq 500 instrument ...
-
bioRxiv - Genomics 2022Quote: ... Hi-C libraries were sequenced on a NextSeq 550 apparatus (2 × 75 bp, paired-end Illumina NextSeq). Contact maps were generated from reads using the hicstuff pipeline for processing generic 3C data ...
-
bioRxiv - Genomics 2022Quote: ... and DpnII and HindIII Hi-C material was sequenced (2×50 nt) on a HiSeq 4000 (Illumina) following the manufacturer’s instructions) ...
-
bioRxiv - Evolutionary Biology 2022Quote: ... and sequencing (Illumina Hi-Seq) were performed by Iridian Genomes ...
-
bioRxiv - Genetics 2022Quote: ... For NGS (Illumina Hi seq), these quantified DNA samples were sent to the Novo gene (leading-edge genomics services and solutions).
-
bioRxiv - Cancer Biology 2022Quote: ... Probe annotation (such as those located in promoters, CpG island/shores, enhancers, etc) is provided by Illumina’s 450K manifest file ...
-
bioRxiv - Neuroscience 2023Quote: We extracted all the CpG probes from the Illumina methylationEPIC array that were annotated (Illumina UCSC annotation) to DEGs from the RNAseq analysis ...
-
bioRxiv - Genomics 2020Quote: ... and Hi-C sequencing (Illumina sequencing). The tissue samples were stored in liquid nitrogen before sequencing ...
-
bioRxiv - Genomics 2019Quote: Raw Nanopore and Hi-C (Illumina) reads have been deposited in the NCBI SRA and are under the BioProject (PRJNA565796) ...
-
bioRxiv - Evolutionary Biology 2023Quote: ... as well as Hi-C (Illumina) chromatin interaction data ...
-
bioRxiv - Cancer Biology 2022Quote: ... The DNA methylation status of more than 450,000 CpG sites was interrogated using the Infinium HumanMethylation450 microarray (Illumina). Preprocessing and normalization involved steps of probe filtering ...
-
bioRxiv - Genomics 2021Quote: Methyl-seq-captured libraries were sequenced using a Hiseq2500 device (Illumina), by applying paired-end 125bp reads ...
-
bioRxiv - Genomics 2021Quote: The TruSeq Methyl Capture Epic kit was a gift from Illumina. Sequencing libraries were prepared according to the manufacturer’s instructions ...
-
bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 4000, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
-
bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 2500, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
-
bioRxiv - Evolutionary Biology 2022Quote: ... Hi-C sequencing was performed by Illumina HiSeq 2500 platform ...
-
bioRxiv - Neuroscience 2023Quote: ... Libraries were sequenced on Hi-Seq2500 (Illumina) obtaining 2×50 paired-end reads ...
-
bioRxiv - Genetics 2020Quote: ... Genome-wide methylation analysis was performed by interrogating 482,421 unique CpG sites using the Illumina HumanMethylation450 BeadChip platform (Illumina) at the Genomics Shared Resource ...
-
bioRxiv - Genetics 2021Quote: ... Most of the CpG sites could match with a particular gene symbol in the UCSC database provided by Illumina, apart from those which were located in the intergenic regions.
-
bioRxiv - Genomics 2020Quote: ... CpG islands prediction files were downloaded from the UCSC genome browser (containing respectively 24,226 and 26,663 CpG islands for Macaca mulatta and Chlorocebus sabaeus) for the annotation relative to CpG islands following again the annotation criteria used by Illumina for the human genome ...
-
bioRxiv - Cancer Biology 2021Quote: ... All Hi-C libraries were sequenced by Illumina sequencing ...
-
bioRxiv - Immunology 2023Quote: ... Samples were sequenced on HI-Seq 2500 (Illumina). 11 nucleotide adaptors were trimmed from each read and resultant sequences were aligned to the mm10 genome using bowtie2 (Langmead and Salzberg ...
-
bioRxiv - Immunology 2024Quote: ... then sequenced using Hi-seq 4000 sequencer (Illumina).
-
bioRxiv - Immunology 2019Quote: ... and sequenced on an Hi-Seq 2500 platform (Illumina).
-
bioRxiv - Molecular Biology 2022Quote: ... The sequencing was processed on Hi-SEQ 2000 (Illumina) as single-end 50 base reads ...
-
bioRxiv - Cancer Biology 2023Quote: ... Infinium BeadChip array (EPIC) using manufacturer’s instructions were then used to quantify the methylation status of CpG sites on an iScan (Illumina, San Diego, USA). Additionally ...
-
bioRxiv - Genetics 2023Quote: ... The Illumina TruSeq Methyl Capture EPIC library prep kit (Illumina, Santa Clara, CA, USA) was used following the manufacturer’s instructions ...
-
bioRxiv - Genetics 2024Quote: ... libraries were prepared using EpiGnome™ Methyl-Seq reagents (Illumina, Inc, San Diego, CA), index-tagged for multiplexing ...
-
bioRxiv - Systems Biology 2020Quote: ... Cohort 2 gene expression data were measured using a Human Ref-8 BeadChip array (Illumina, Inc) with ∼22k probes ...
-
bioRxiv - Genomics 2024Quote: Methylation analysis was conducted using the Illumina Infinium chemistry.43 DNAm levels across ∼850,000 CpG sites were measured using the Infinium Methylation EPIC BeadChip (Illumina, Inc.; San Diego, CA). Beta values for CpG sites across the genome were measured according to kit protocols and filtered to remove polymorphic positions ...
-
bioRxiv - Genetics 2022Quote: ... were analyzed by Illumina Hi-Seq 2500 system (Illumina, Inc., San Diego, CA, USA).
-
bioRxiv - Genomics 2022Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
-
bioRxiv - Pharmacology and Toxicology 2021Quote: ... with NSQ 500 hi-Output KT v2 (75 CTS, Illumina). The sequencing reads were aligned to the GRCm38 v84 Ensembl Mus musculus genome using STAR v.2.5.2a with default parameters ...
-
bioRxiv - Genomics 2019Quote: ... The amplified cDNAs were sequenced using Hi-Seq2000 (Illumina, Inc.) and the sequenced cDNAs were mapped to the C ...