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Citations for Illumina :
1 - 50 of 329 citations for Malate dehydrogenase mitochondrial MDH2 Human HEK293 His since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2021Quote: We downloaded publicly-available Hi-C data from human prefrontal cortex tissue23,24 (Illumina HiSeq 2000 paired-end raw sequence reads ...
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bioRxiv - Genomics 2020Quote: Mitochondrial genomes (mitogenomes) were reconstructed from Illumina reads with MITObim version 1.6 [54] ...
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bioRxiv - Microbiology 2024Quote: ... The mitochondrial genome was assembled from Illumina reads using GetOrganelle (v1.7.5.3 ...
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bioRxiv - Microbiology 2022Quote: ... A circular mitochondrial genome was assembled from Illumina reads using GetOrganelle (v1.7.5.3 ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Sixteen aphid whole and partial mitochondrial genomes were assembled from Illumina Hiseq 4000 paired reads obtained from the Sequence Read Archive (SRA ...
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bioRxiv - Genomics 2023Quote: Chloroplastic and mitochondrial genomes of each species were reconstructed from Illumina raw reads using NovoPlasty (Dierckxsens et al ...
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bioRxiv - Evolutionary Biology 2022Quote: ... and sequencing (Illumina Hi-Seq) were performed by Iridian Genomes ...
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bioRxiv - Genetics 2022Quote: ... For NGS (Illumina Hi seq), these quantified DNA samples were sent to the Novo gene (leading-edge genomics services and solutions).
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bioRxiv - Genomics 2020Quote: ... and Hi-C sequencing (Illumina sequencing). The tissue samples were stored in liquid nitrogen before sequencing ...
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bioRxiv - Genomics 2019Quote: Raw Nanopore and Hi-C (Illumina) reads have been deposited in the NCBI SRA and are under the BioProject (PRJNA565796) ...
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bioRxiv - Evolutionary Biology 2023Quote: ... as well as Hi-C (Illumina) chromatin interaction data ...
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bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 4000, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
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bioRxiv - Molecular Biology 2020Quote: ... pooled and sequenced (Hi-Seq 2500, Illumina). Reads from the sequencer were demultiplexed using bcl2fastq (v2.20.0) ...
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bioRxiv - Evolutionary Biology 2022Quote: ... Hi-C sequencing was performed by Illumina HiSeq 2500 platform ...
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bioRxiv - Neuroscience 2023Quote: ... Libraries were sequenced on Hi-Seq2500 (Illumina) obtaining 2×50 paired-end reads ...
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bioRxiv - Genetics 2019Quote: ... The probe intensities of the remaining mitochondrial SNPs (25 Affymetrix, 58 Illumina Exome Chip) were determined using quantile sketch normalization (apt-probeset-summarize ...
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bioRxiv - Genomics 2021Quote: ... AGENOME-ZPMS-HV2a-1 was generated by realigning the mapped mitochondrial reads from Illumina as well as Nanopore data with the initial assembly.
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bioRxiv - Cancer Biology 2021Quote: ... All Hi-C libraries were sequenced by Illumina sequencing ...
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bioRxiv - Genomics 2023Quote: ... and Hi-C (Illumina NovaSeq 6000, 2×150bp) for chromosome-level scaffolding (Fig ...
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bioRxiv - Immunology 2023Quote: ... Samples were sequenced on HI-Seq 2500 (Illumina). 11 nucleotide adaptors were trimmed from each read and resultant sequences were aligned to the mm10 genome using bowtie2 (Langmead and Salzberg ...
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bioRxiv - Immunology 2024Quote: ... then sequenced using Hi-seq 4000 sequencer (Illumina).
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bioRxiv - Evolutionary Biology 2024Quote: ... Mitochondrial genomes for all individuals in the sister-species dataset were extracted directly from Illumina reads with GetOrganelle v1.7.5.3 (Jin et al ...
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bioRxiv - Immunology 2019Quote: ... and sequenced on an Hi-Seq 2500 platform (Illumina).
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bioRxiv - Molecular Biology 2022Quote: ... The sequencing was processed on Hi-SEQ 2000 (Illumina) as single-end 50 base reads ...
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bioRxiv - Genetics 2022Quote: ... were analyzed by Illumina Hi-Seq 2500 system (Illumina, Inc., San Diego, CA, USA).
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bioRxiv - Genomics 2022Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
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bioRxiv - Pharmacology and Toxicology 2021Quote: ... with NSQ 500 hi-Output KT v2 (75 CTS, Illumina). The sequencing reads were aligned to the GRCm38 v84 Ensembl Mus musculus genome using STAR v.2.5.2a with default parameters ...
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bioRxiv - Genomics 2019Quote: ... The amplified cDNAs were sequenced using Hi-Seq2000 (Illumina, Inc.) and the sequenced cDNAs were mapped to the C ...
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bioRxiv - Evolutionary Biology 2020Quote: ... Library sequencing was carried out on a Hi-seq4000 (Illumina) according to the method described by Pertea et al ...
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bioRxiv - Genomics 2023Quote: ... The Hi-C library was amplified using PE primers (Illumina) with 10 PCR amplification cycles ...
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bioRxiv - Genomics 2019Quote: ... Hi-C libraries were prepared for sequencing on HiSeq 4000 (Illumina). After sequencing ...
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bioRxiv - Immunology 2020Quote: ... 100-cycle sequencing was performed on a Hi-seq 4000 (Illumina) to achieve an average 40× coverage.
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bioRxiv - Microbiology 2020Quote: ... Cytosolic and mitochondrial ribosomal RNA was removed from samples using the Ribo-Zero Gold Kit according to manufacturer’s instructions (Illumina). The quality of RNA was confirmed (RIN >8.5 ...
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bioRxiv - Microbiology 2020Quote: ... Cytosolic and mitochondrial ribosomal RNAs were removed from samples using the Ribo-Zero Gold Kit according to manufacturer’s protocol (Illumina). RNA samples were used to prepare cDNA libraries by the University of Michigan DNA Sequencing Core and the quality of RNA was confirmed ...
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bioRxiv - Genomics 2023Quote: ... We completed the mitochondrial genome by inspecting the mapping results and editing the gap regions usually spanned by Illumina- and/or ONT-reads.
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bioRxiv - Genomics 2019Quote: ... and the Hi-C libraries were paired-end sequenced (HiSeq 2500, Illumina).
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bioRxiv - Genomics 2020Quote: ... pooled and sequenced on a Next-seq instrument (Illumina Hi-Seq 4000) using 50 cycles paired-end mode.
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bioRxiv - Genomics 2019Quote: ... A single replicate was sequenced (Illumina Hi-Seq 2000, DKFZ, Heidelberg, Germany). Hi-C QC information is available in supplementary table 4.
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bioRxiv - Genetics 2021Quote: ... the Hi-Seq 2500 or the Novaseq (Illumina, Inc. San Diego, CA). DNA samples were sequenced to a mean depth of 30x to ensure that all variants were captured.
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bioRxiv - Developmental Biology 2024Quote: ... and cytoplasmic and mitochondrial rRNA-deleted stranded Total RNA libraries were prepared using Illumina Truseq RNA Library Prep kit (Illumina 20020589) from four individual adult ovaries (2 buc:mApple-Rbpms2b-3’UTR crosslinked and 2 buc:mApple crosslinked) ...
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bioRxiv - Genetics 2020Quote: ... cDNA libraries were then sequenced using an Illumina Hi-Seq 2500/NOVA (Illumina).
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bioRxiv - Genomics 2020Quote: ... Hi-C libraries were paired-end sequenced on a NovaSeq 6000 system (Illumina). Raw data were processed with the ENCODE 4 pipeline for Hi-C according to ENCODE 4 standards (https://www.encodeproject.org/documents/75926e4b-77aa-4959-8ca7-87efcba39d79/).
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Dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis revealed by its hologenomebioRxiv - Genomics 2020Quote: ... The Hi-C library was sequenced on a NovaSeq 6000 platform (Illumina, USA) and generated reads with a length of 150 bp ...
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bioRxiv - Cancer Biology 2022Quote: ... Hi-C libraries were sequenced 2×150bp on a NovaSeq 6000 instrument (Illumina). Juicer were used to process raw reads and generate Hi-C contact matrices (.hic files) ...
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bioRxiv - Biophysics 2022Quote: ... The sequencing (Step 4) was performed using a Hi-Seq sequencer (Illumina, US) and the data was then filtered using the framing sequence ACAC with a quality score larger then 20 and analyzed (Step 5 ...
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bioRxiv - Cancer Biology 2023Quote: ... and sequencing was performed using the Hi-Seq platform (Illumina, San Diego, California) with 40 million paired end reads per sample.
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bioRxiv - Plant Biology 2023Quote: ... Hi-C libraries were sequenced on Illumina NextSeq500 (Illumina, San Diego, CA, USA) platform using platform using High Output Kit v2.5 (150 Cycles).
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bioRxiv - Cancer Biology 2023Quote: ... and sequencing was performed using the Hi-Seq platform (Illumina, San Diego, California) with 40 million paired end reads per sample.
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bioRxiv - Genomics 2023Quote: ... The Hi-C library was sequenced on a NovaSeq 6000 platform (Illumina, USA) and generated reads with a length of 150 bp producing 32.08 Gbp of data in total (Supplementary Table 1) ...
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bioRxiv - Cancer Biology 2021Quote: ... RNA-seq libraries were prepared using the TruSeq Stranded Total RNA prep kit with Ribo-Zero Gold to remove cytoplasmic and mitochondrial rRNA according to the manufacturer’s recommendation (Illumina, San Diego, CA). Total RNA-seq libraries were run on an Illumina NextSeq 500 sequencing instrument according to the manufacturer’s protocol ...