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Citations for Illumina :
1 - 50 of 2142 citations for 6 Methoxy 2 methyl 1H benz de isoquinoline 1 3 2H dione since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2020Quote: ... De-multiplexing of RNA-Seq reads was conducted using bcl2fastq v.2 (Illumina). Both DNA-Seq and RNA-Seq reads were submitted to FastQC 51 for quality validation.
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bioRxiv - Systems Biology 2024Quote: ... according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina) for the second read ...
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bioRxiv - Microbiology 2023Quote: ... Universitat Autònoma de Barcelona (Illumina pair-end 2X300 bp ...
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bioRxiv - Microbiology 2023Quote: De Novo Assembly from Illumina reads was performed using MEGAHIT (Li et al ...
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bioRxiv - Evolutionary Biology 2022Quote: ... or to the Plateforme de séquençage et de génotypage des génomes (CRCHUL, Quebec, Canada) for paired-end 250 bp sequencing on a NovaSeq (Illumina). All raw data are available at SRA BioProject PRJNA842350 (accession numbers SRR19419448 and SRR19419449).
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bioRxiv - Microbiology 2023Quote: ... 2 μl of the v1.5 sRNA 3’ adapter (Illumina) was mixed with the 14 μl eluate of the previous step in a 200 μl nuclease-free ...
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bioRxiv - Molecular Biology 2023Quote: ... for 1[h at 60°C and was subsequently PCR amplified using the primers 5′-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTC-3′ and 5′-CAAGCAGAAGACGGCATACGAGATJJJJJJGTGACTGGAGTTCAGACGTGTG-3′(where Js indicates the 6-mer index sequence for Illumina sequencing).
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bioRxiv - Microbiology 2021Quote: ... Results were de-multiplexed with bcl2fastq v2.17.1.14 (Illumina). Reads were quality filtered and trimmed using Bioconductor package ShortRead (91 ...
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bioRxiv - Cell Biology 2022Quote: ... Genome samples were de-multiplexed using bcl2fastq (Illumina), assembled using Burrow-Wheeler Aligner (Li and Durbin ...
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bioRxiv - Developmental Biology 2021Quote: ... Sample de-multiplexing was performed using CASAVA 1.8.2 (Illumina).
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bioRxiv - Immunology 2019Quote: ... Samples were de-multiplexed with bcl2fastq tool from Illumina, and tag bam files with read sequence extended were processed to differentiate molecular barcodes ...
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bioRxiv - Cell Biology 2019Quote: NextSeq raw files were de-multiplexed using bcl2fastq (Illumina) with 0 nt mismatch for indexes and assembled using the Burrows-Wheeler Aligner (Li and Durbin ...
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bioRxiv - Molecular Biology 2020Quote: ... After de-multiplexing sequenced raw files with bcl2fastq (Illumina), quality was checked with FastQC[36] ...
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Genetic heterogeneity in the Salmonella Typhi Vi capsule locus: A population genomic study from FijibioRxiv - Microbiology 2023Quote: ... De novo draft genome assemblies were generated from Illumina short reads using SPAdes v v3.14.1 and were screened for known antimicrobial resistance determinants in AMRFinderPlus (https://github.com/MDU-PHL/abritamr ...
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bioRxiv - Cell Biology 2023Quote: ... and reads were de-multiplexed using Illumina bcl2fastq (Illumina). De-multiplexed reads were then aligned to the mouse GRCm38/mm10 sequence using STAR-2.7.9a ...
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bioRxiv - Molecular Biology 2024Quote: Raw sequencing reads were de-multiplexed using bcl2fastq (Illumina). Trimming ...
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bioRxiv - Molecular Biology 2024Quote: Raw sequencing reads were de-multiplexed using bcl2fastq (Illumina). Adapters were trimmed using cutadapt (v.1.18 ...
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bioRxiv - Microbiology 2023Quote: ... as well as 6 PCR negative control and 3 extraction negatives on a NovaSeq 6000 (Illumina), with 2 Gb requested per sample.
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bioRxiv - Microbiology 2019Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) and adapter sequences were removed (Clip adaptor sequence ...
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bioRxiv - Genomics 2021Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) [40] and adapter sequences were removed (Clip adaptor sequence ...
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bioRxiv - Immunology 2021Quote: ... After de-multiplexing using the MiSeq Reporter software (Illumina Inc.), the analysis of the read sequences was performed by a Visual Basic-based in-house software (NGSSequence Analyser ...
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bioRxiv - Pathology 2023Quote: ... Raw data were de-multiplexed (Illumina Demultiplex, Galaxy Version 1.0.0) and adapter sequences were removed (Clip adaptor sequence ...
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bioRxiv - Plant Biology 2023Quote: ... and automatically de-multiplexed by the BaseSpace Sequence Hub (Illumina).
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bioRxiv - Plant Biology 2023Quote: Raw sequencing data were de-multiplexed with bcl2fastq software (Illumina). FASTQ files were mapped to the TAIR10 genome using STAR with default parameters (Dobin et al ...
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bioRxiv - Molecular Biology 2023Quote: ... Dual indexed samples were de-multiplexed using bcl2fastq software (Illumina).
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bioRxiv - Molecular Biology 2022Quote: ... followed by library construction using non-stranded (Replicate 1) or stranded (Replicates 2 and 3) TruSeq mRNA Library Prep Kit (Illumina). The resulting libraries were sequenced on Hiseq4000.
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bioRxiv - Genomics 2021Quote: Methyl-seq-captured libraries were sequenced using a Hiseq2500 device (Illumina), by applying paired-end 125bp reads ...
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bioRxiv - Genomics 2021Quote: The TruSeq Methyl Capture Epic kit was a gift from Illumina. Sequencing libraries were prepared according to the manufacturer’s instructions ...
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bioRxiv - Genomics 2019Quote: ... and with short reads using Pilon (two runs; Illumina library; Figure 1h).
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bioRxiv - Microbiology 2020Quote: ... NGS sequencing was accomplished using MiSeq v.3 2×75 chemistry (Illumina). Raw sequencing files were demultiplexed using IlluminaBasecallsToFasq procedure from PICARD package and mapped to NC_055512.2 SARS-CoV-2 reference sequence with BwaAndMarkDuplicatesPipelineSpark procedure from GATK v.4.1.5.0 package (Broad Institute ...
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bioRxiv - Microbiology 2023Quote: ... version 3 (2×300 bp read length; Illumina, San Diego, CA, USA).
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bioRxiv - Microbiology 2019Quote: ... De-convolution was performed using the CASAVA software (Illumina, United States). Sequencing data are publicly available under the BioProject PRJNA555042.
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bioRxiv - Evolutionary Biology 2020Quote: ... The reference-guided and de novo RNA-seq assemblies from Illumina short read data (Supplementary Table 1a ...
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bioRxiv - Genomics 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
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bioRxiv - Evolutionary Biology 2022Quote: ... De-convolution was performed using the CASAVA software (Illumina, United States).
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bioRxiv - Genetics 2022Quote: ... followed by de-multiplexing with the bcl2fastq 2.17 software from Illumina.
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bioRxiv - Evolutionary Biology 2019Quote: Barcoded reads were de-multiplexed using the CASAVA pipeline 1.8 (Illumina). The obtained raw sequencing reads were quality checked and over-represented ...
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bioRxiv - Animal Behavior and Cognition 2020Quote: ... Individual reads were de-multiplexed using the CASAVA pipeline (Illumina v1.8.2), obtaining the FASTQ files used for downstream bioinformatics analysis ...
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bioRxiv - Cell Biology 2020Quote: ... Paired de-multiplexed fastq files were generated using CASAVA software (Illumina) and processed using tools from CLC Bio (QIAGEN).
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bioRxiv - Genomics 2022Quote: We de-multiplexed paired-end reads using BCL2FASTQ v2.17.1.14 (Illumina, Inc.) and removed adapter sequences using CUTADAPT v1.3 (Martin 2011) ...
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bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
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bioRxiv - Plant Biology 2023Quote: ... Raw sequencing data were then de-multiplexed with bcl2fastq software (Illumina).
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bioRxiv - Molecular Biology 2024Quote: ... Base calling and de-multiplexing were performed using the bcl2fastq2 (Illumina) v2.20 ...
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bioRxiv - Cancer Biology 2019Quote: ... Libraries were 6-plexed and sequenced with 2×100bp reads on a HiSeq-4000 (Illumina). The data were mapped using BWA ...
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bioRxiv - Physiology 2022Quote: ... Samples were sequenced on the HiSeq 2500 (Figure 2) or NovaSeq 6000 (Figure 6; Illumina) using a 2×100 kit to a read depth >45 million reads/sample ...
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bioRxiv - Molecular Biology 2022Quote: ... The raw MiniSeq output was de-multiplexed using bcl2fastq2 (Illumina, version 2.20.0) with the flag --barcode-mismatches 0 ...
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bioRxiv - Cell Biology 2019Quote: Sequence data was de-multiplexed using bcl2fastq2 Conversion Software v2.18 (Illumina Inc.) and quality analysed using FastQC ...
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bioRxiv - Physiology 2020Quote: ... Sequence data was de-multiplexed using bcl2fastq2 Conversion Software v2.18 (Illumina Inc.) and quality analysed using FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc) ...
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bioRxiv - Microbiology 2021Quote: ... A draft wild type phi47 genome was assembled de novo from Illumina reads obtained from MiGS ...
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bioRxiv - Genomics 2019Quote: ... we used the de novo and genome-guided transcriptome assemblies from Illumina short-read sequence data ...