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Citations for Illumina :
1 - 50 of 1318 citations for 6β Fluoro 21 hydroxypregna 1 4 9 11 16 tetraene 3 20 dione 21 acetate since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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bioRxiv - Genomics 2022Quote: We collected 21-mers from Illumina reads of HG002 (250bp paired-end ...
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bioRxiv - Genetics 2023Quote: ... 21-kmers of reads were collected from Illumina and HiFi reads of offspring and the parental Illumina reads using Meryl ...
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bioRxiv - Microbiology 2020Quote: ... Samples were sequenced following amplification of the V4 hypervariable region of the 16S rRNA gene with modified F515/R806 primers [21] on a MiSeq platform (Illumina, San Diego, CA, USA) in 2016 (Batch 1 ...
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bioRxiv - Evolutionary Biology 2020Quote: ... The 21 cDNA libraries were then pooled and sequenced (Illumina HiSeq 2000). See supplementary material for details.
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bioRxiv - Evolutionary Biology 2024Quote: ... we estimated Ne using whole genome resequencing data (21× depth of coverage by ILLUMINA technology) for wild Central Asian ...
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bioRxiv - Genetics 2021Quote: ... Libraries were sequenced by NextSeq 550 High Output with 21 bp for read 1 and 72 bp for read 2 (Illumina). Sequenced reads were aligned using STAR (v2.7.6a ...
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bioRxiv - Microbiology 2020Quote: ... water (n=9) and sediment (n=9) samples were subjected to bacterial 16S rRNA amplicon profiling by Illumina sequencing ...
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bioRxiv - Cell Biology 2023Quote: Protospacers were quantified by deep sequencing using 21 initial dark cycles on a NextSeq 2000 device (Illumina) by the Genome Engineering and Measurement Lab of the Functional Genomics Center Zürich (GEML ...
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bioRxiv - Evolutionary Biology 2020Quote: ... We produced libraries for these 21 individuals using the TruSeq RNA Library Prep Kit v2 (Illumina, Inc., USA) with a unique barcode for each library ...
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bioRxiv - Plant Biology 2019Quote: ... for a total of 21 libraries) were constructed using the RNA TruSeq Kit (Illumina, Inc., San Diego, CA, USA), barcoded (TACT ungalled ...
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bioRxiv - Cancer Biology 2020Quote: ... RNA-Seq libraries were generated as described (21) using the TruSeq RNA sample preparation kit (Illumina Inc., San Diego, CA). Sequencing was performed using HiSeq 2000 or 2500 systems (Illumina Inc.) ...
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bioRxiv - Plant Biology 2023Quote: ... Gf.43-21 and 65-153-18 were sequenced 2x150 bp paired-end on an Illumina NextSeq-500 (Illumina, San Diego, USA). Illumina NGS libraries were created following the TruSeq DNA Sample Preparation v2 Guide ...
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bioRxiv - Microbiology 2021Quote: Bacterial 16S V3-V4 regions were amplified by PCR using universal primers derived from DBact-0341-b-S-17 and S-D-Bact-0785-a-A-21 (24) containing unique adapters for the Nextera XT indexing kit according to the manufacturer’s instructions (Illumina Inc., San Diego, CA). Fungal ITS2 regions were amplified using separate unique adapter primers derived from IST3_KYO1 and IST4_KYO1 (25) ...
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bioRxiv - Microbiology 2022Quote: ... A total of 21 isolates were selected (one representative from each cluster) for whole-genome sequencing using the Illumina NovaSeq 6000 (Illumina, San Diego, CA, USA) platform ...
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bioRxiv - Microbiology 2019Quote: 16S amplicon sequencing targeting the V3 and V4 variable regions of the 16S rRNA (341F: 5’-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3’ and 805R: 5’- GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATC C-3’) was performed on the Illumina MiSeq platform (Illumina, California, USA) according to manufacturer’s guidelines and generated paired-end reads of 300bp in each direction ...
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bioRxiv - Genetics 2021Quote: ... 3) SpliceAI (SAI)11 scores were retrieved using a script adapted from the SAI github repository (https://github.com/Illumina/SpliceAI) which allows spliceAI to score custom sequences ...
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bioRxiv - Microbiology 2021Quote: ... 9) DC3000 − C (Illumina only), 10 ...
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bioRxiv - Microbiology 2019Quote: ... RNA libraries were multiplexed and run across 9 lanes (infected tissues) or 3 lanes (uninfected tissues) for paired end sequencing by Illumina HiSeq 2500 at the University of Wisconsin Biotechnology Center ...
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bioRxiv - Cancer Biology 2022Quote: ... performed the library preparation for WGS of parental and resistant cells of cell lines #3 and #9 as well as a control tail samples corresponding to line #3 with the TruSeq DNA PCR-free Kit (Illumina) and the 150 bp paired-end sequencing on a HiSeq X (Illumina).
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bioRxiv - Molecular Biology 2024Quote: ... CUT&RUN libraries (10–20 Mio reads per sample and 1/3 of reads for the controls) were sequenced on a NovaSeq 6000 (Illumina) paired end 100 bp at the Deep Sequencing Facility (Max Planck Institute for Immunobiology and Epigenetics ...
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bioRxiv - Genomics 2020Quote: ... using 5% PhiX without dark cycles (n = 11) or 10-20% PhiX with 7 dark cycles (protocol provided by Illumina, n = 49). A maximum of 12 samples were pooled in one sequencing run resulting in 19.05 million [17.05 – 21.72] single-end reads per sample on average (supplementary table 3).
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bioRxiv - Genomics 2020Quote: ... Multiple mate-paired libraries (3, 8, 12 and 16 kb) were also constructed using the Nextera Mate-Paired Library Construction kit (Illumina). Libraries were sequenced on the Illumina HiSeq 2500 sequencer using the Illumina TruSeq PE Cluster kit v3 and TruSeq SBS kit v3 (101 ...
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bioRxiv - Genetics 2023Quote: ... to 9 uL of FSA (Illumina #20020599). After cDNA synthesis ...
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bioRxiv - Microbiology 2023Quote: ... The 16S rRNA gene V3-V4 regions were amplified (4) followed by addition of Illumina sequencing barcoded adaptors (Illumina, CA, USA.). The libraries were normalized and pooled for multiplex sequencing using the Illumina MiSeq v3 600 cycles cartridge (Illumina ...
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bioRxiv - Microbiology 2021Quote: ... the pooled library was diluted to 9 pM and spiked with 15% of 9-pM PhiX prepared from PhiX Control Kit v3 (Illumina). The pooled library was then loaded on the MiSeq sequencer (Illumina ...
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bioRxiv - Cancer Biology 2019Quote: ... we obtained 11 DNA methylation datasets (Illumina 450k platform) from Gene Expression Omnibus (GEO ...
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bioRxiv - Microbiology 2020Quote: ... To sequence 16S amplicons by Illumina MiSeq platform ...
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bioRxiv - Cancer Biology 2022Quote: ... for 11 cycles and sequenced on a NextSeq 500 (Illumina). All samples were processed at the Center for Epigenetics Research (CER ...
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bioRxiv - Microbiology 2022Quote: ... for amplicon sequencing of the V3-4 hypervariable region of the 16S rRNA gene (position 341-806) on a MiSeq desktop sequencing platform (Illumina, San Diego, CA) operated under paired-end mode ...
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bioRxiv - Microbiology 2022Quote: ... for amplicon sequencing of the V3-4 hypervariable region of the 16S rRNA gene (position 341-806) on a MiSeq desktop sequencing platform (Illumina, San Diego, CA) operated under paired-end mode ...
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bioRxiv - Microbiology 2023Quote: ... 4 μl of the 3’-5’-adapter-ligated RNA was mixed with barcoded RT primers (Illumina) and cDNA synthesis was performed using SuperScript™ II Reverse Transcriptase (Invitrogen ...
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bioRxiv - Microbiology 2019Quote: Amplification and purification of V3-V4 regions of the 16S rRNA genes were performed according to the 16S Metagenomic Sequencing Library Preparation protocol (13) from Illumina ® with the following modifications ...
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bioRxiv - Microbiology 2020Quote: ... 2 ng of DNA was used for amplicon PCR and the product used for 16S rDNA amplicon library preparation following the 16S Metagenomic Sequencing Library Preparation guide provided by Illumina. The Arch349F - Arch915R primer pair was used to amplify the archaeal V3-V5 region and the Bact341F - Bact785R primer pair for the bacterial V3-V4 region (Table S1) ...
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bioRxiv - Microbiology 2019Quote: ... using a modified PowerWater® Sterivex™ DNA Kit and from cryoconite using a PowerBiofilm™ RNA Isolation Kit (MO BIO Laboratories) prior to 16S rRNA gene and 16S rRNA (cDNA) quantitative PCR (qPCR) and V3-V4 region MiSeq (Illumina) sequencing ...
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bioRxiv - Neuroscience 2022Quote: ... The regions V3 and V4 of the bacterial ribosomal RNA 16S gene were amplified and purified according to 16S Metagenomic Sequencing Library Preparation protocol by Illumina. A paired-end sequencing of 300 cycles per read was performed ...
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bioRxiv - Microbiology 2024Quote: The V3–V4 hypervariable regions of the 16S rRNA gene were amplified and library preparation was performed following the 16S Metagenomic Sequencing Library Preparation protocol (Illumina) and the Nextera technology to index libraries ...
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bioRxiv - Genetics 2021Quote: ... Japan where 16S rRNA amplicon sequencing (Illumina MiSeq) and the bioinformatics analysis was performed ...
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bioRxiv - Microbiology 2020Quote: 16S rRNA gene sequences were retrieved from Illumina and PacBio reads ...
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bioRxiv - Plant Biology 2021Quote: The 16S rRNA gene amplicons generated by Illumina MiSeq were used to estimate the diversity and composition of the bacterial communities present in both the rhizosphere and root of each Test Phase Brassicaceae sample ...
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bioRxiv - Microbiology 2022Quote: ... following a modified 16S rRNA protocol from Illumina for use with the Nextera XT kit ...
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bioRxiv - Microbiology 2023Quote: The 16S rRNA gene amplicons generated by Illumina MiSeq were used to estimate the diversity and composition of the bacterial communities present in each soil and MSB sample ...
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bioRxiv - Microbiology 2022Quote: BLAST searches were done to directly compare sequence identities in a pair-wise manner for the three sequencing strategies (ONT 16S rRNA gene amplicons, Illumina 16S rRNA gene amplicons, and Illumina metagenomes). A custom searchable database was created from the ONT sequences using the command makeblastdb ...
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bioRxiv - Evolutionary Biology 2023Quote: ... (2016) sequenced mouse whole genomes to 11-26x coverage (Illumina HiSeq 2000) from natural populations of house mouse (Mus musculus) ...
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bioRxiv - Microbiology 2022Quote: Amplicon libraries were prepared according to (16) using published 16S and 18S rRNA gene primers (Table S1) and by sequencing via the MiSeq platform (Illumina Inc., USA). Raw sequence reads were processed following a bioinformatic pipeline in Deng et al ...
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bioRxiv - Immunology 2019Quote: ... The adaptor sequences for 16S metagenomic library preparation (Illumina) were added to the 5□ ends of the primers designed ...
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bioRxiv - Plant Biology 2020Quote: ... we analysed 16S rRNA gene sequences (Illumina MiSeq platform) recovered from publicly available and newly generated data on seagrass roots and sediments across 14 seagrass species and 10 countries (Fig ...
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bioRxiv - Microbiology 2020Quote: ... PCR amplification followed Earth Microbiome Project recommendations (“16S Illumina Amplicon Protocol ...
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bioRxiv - Microbiology 2022Quote: ... region was amplified using the primer set (16S-341F/805R, see Table S2 for nucleotide sequences) according to the 16S Metagenomic Sequencing Library Preparation procedure (Illumina; San Diego, CA). The success of PCR amplification was confirmed using agarose electrophoresis (1.5%) ...
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bioRxiv - Systems Biology 2024Quote: ... according to the Ovation RRBS Methyl-Seq System 1-16 protocol for the first read and the Read 2 primer (Illumina) for the second read ...
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bioRxiv - Genetics 2020Quote: ... The V3–V4 hypervariable regions of the bacterial 16S rRNA were amplified with a two-step barcoding approach according to the Illumina 16S Metagenomic Sequencing Library Preparation (Illumina, San Diego, CA, USA). Library quantification was determined using the Agilent 2100 Bioanalyzer System (Agilent ...