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Citations for Sciex :
1 - 50 of 91 citations for Borrelia burgdorferi sensu stricto B31 DbpA Protein since 2019
Citations are collected from bioRxiv only, the total number of publications could be much larger.
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Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme researchbioRxiv - Biochemistry 2023Quote: Log phase B31 and MM1 Borrelia samples were analyzed using 5600+ Triple-TOF mass spectrometry (ABSciex, USA) coupled with Eksigent 400 nano-HPLC (Sciex, USA). Peptides from the 2 isolates were run separately by loading on trap column (200 μm × 0.5 mm ...
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bioRxiv - Neuroscience 2022Quote: ... Protein identification was carried out using Protein Pilot 5.0 (SCIEX) for database searching.
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bioRxiv - Biochemistry 2020Quote: Proteins and peptides were identified with Protein Pilot 5.1 (SCIEX) as previously described1,16 ...
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bioRxiv - Molecular Biology 2019Quote: ... All MS/MS spectra were searched against protein sequences of the RefSeq (NCBI) human protein database (RDB) using the Protein Pilot software package (AB Sciex), and decoy sequences were then selected with a false discovery rate <1%.
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bioRxiv - Molecular Biology 2019Quote: ... All MS/MS spectra were searched against protein sequences of RefSeq (NCBI) human protein database using the Protein Pilot software package (AB Sciex) and its decoy sequences then selected the peptides FDR was <1% ...
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bioRxiv - Molecular Biology 2023Quote: All MS/MS spectra were searched against protein sequences in the NCBI protein dataset (NCBInr RefSeq Release 90) using the Protein Pilot software package (AB Sciex).
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bioRxiv - Plant Biology 2021Quote: Peptide and protein identifications were performed using Protein Pilot software (version 5.0.1, Sciex) with the Paragon algorithm ...
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bioRxiv - Genomics 2020Quote: ... LC-MS-MS data originally generated from tryptic digests of rye flour protein extracts were re-analyzed and protein identification was undertaken using ProteinPilotTM 5.0 software (SCIEX) with the Paragon and ProGroup algorithms with searches conducted against the Poaceae subset of the Uniprot database appended with the identified 1RS gene models and a contaminant database (Common Repository of Adventitious Proteins ...
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bioRxiv - Cancer Biology 2020Quote: ... Equal amount of proteins (100 μg) from all samples were taken for tryptic protein preparation following manufacturer’s instructions (AB Sciex, USA). Study samples with the tag details used for labelling in iTRAQ experiment are presented in Fig ...
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bioRxiv - Cancer Biology 2020Quote: ... Equal amount of proteins (100 μg) from all samples were taken for tryptic protein preparation following manufacturer’s instructions (AB Sciex, USA). Study samples with the tag details used for labelling in iTRAQ experiment are presented in (Fig ...
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bioRxiv - Biochemistry 2021Quote: ... and proteins was determined using PeakView 2.2 (SCIEX), with settings ...
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bioRxiv - Biochemistry 2019Quote: ... and proteins was determined using PeakView 2.1 (SCIEX), with settings ...
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bioRxiv - Biochemistry 2020Quote: ... and proteins was determined using PeakView 2.1 (SCIEX), with settings ...
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bioRxiv - Biochemistry 2022Quote: ... and proteins was determined using PeakView 2.2 (SCIEX) with settings ...
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bioRxiv - Biochemistry 2019Quote: Peptides and proteins were identified using ProteinPilot 5.1 (SCIEX), searching against E ...
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bioRxiv - Biochemistry 2021Quote: Peptides and proteins were identified using ProteinPilot 5.0.1 (SCIEX), searching against a database containing all high confidence proteins from transcripts from the barley genome (31 ...
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bioRxiv - Biochemistry 2021Quote: Peptides and proteins were identified using ProteinPilot v5.0.1 (SCIEX) using a custom database containing the OsRGLP1 or MBP-OsRGLP1 fusion protein sequences ...
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bioRxiv - Biochemistry 2019Quote: Peptides and proteins were identified using ProteinPilot 5.1 (SCIEX), searching against all eukaryotic proteins in UniProtKB (downloaded 29/01/2015 ...
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bioRxiv - Biochemistry 2019Quote: Peptides and proteins were identified using ProteinPilot 5.1 (SCIEX), searching against all eukaryotic proteins in UniProtKB (downloaded 29 Jan 2015 ...
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bioRxiv - Biochemistry 2021Quote: Peptides and proteins were identified using ProteinPilot 5.1 (SCIEX), searching against High confidence proteins from transcripts from Hordeum vulgare IBSC v1 (downloaded 3 May 2017 ...
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bioRxiv - Biochemistry 2022Quote: Peptides and proteins were identified using ProteinPilot 5.0.1 (SCIEX). Sorghum samples were searched against all predicted proteins from S ...
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bioRxiv - Microbiology 2024Quote: Peptides and proteins were identified using ProteinPilot 5.0.1 (SCIEX), searching against either S288C S ...
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bioRxiv - Molecular Biology 2020Quote: ... digested proteins were analyzed on a TT5600 mass spectrometer (SCIEX) coupled to an Eksigent Ultra2D-plus nanoHPLC ...
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bioRxiv - Neuroscience 2021Quote: ... Protein identification was carried out using ProteinPilot software v5.0 (SCIEX) with Paragon database search algorithm ...
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bioRxiv - Plant Biology 2020Quote: The proteins were identified using the software ProteinPilot v5.0.1 (Sciex) with the method Paragon ...
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bioRxiv - Synthetic Biology 2019Quote: ... Protein identification was undertaken using ProteinPilot™ 5.0 software (SCIEX) with searches conducted against the E ...
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bioRxiv - Microbiology 2024Quote: Plasma proteins were characterized using a TripleTOF 6600 system (Sciex) via liquid chromatography-mass spectrometry (LC-MS ...
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bioRxiv - Cell Biology 2020Quote: ... Protein identification was carried out using ProteinPilot™ software v5.0 (SCIEX) with Paragon™ database search algorithm ...
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bioRxiv - Biophysics 2021Quote: The peptides were identified out using Protein Pilot (version 2.0.1, Sciex) using Pro-Group and Paragon algorithms against the RefSeq protein database of E ...
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bioRxiv - Microbiology 2021Quote: ... The abundance of proteins was measured automatically using PeakView (AB SCIEX) with standard settings ...
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bioRxiv - Microbiology 2022Quote: ... the DDA files were searched using Protein Pilot v4.2 (AB Sciex) and Mascot v2.4 (Matrix Science ...
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bioRxiv - Microbiology 2022Quote: ... The abundance of proteins was measured automatically using PeakView (AB Sciex) with standard settings ...
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bioRxiv - Neuroscience 2020Quote: ... Proteins present in the supernatant were quantified following iTRAQ labeling (AB ScieX) essentially following the manufacturer’s instructions ...
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bioRxiv - Genomics 2019Quote: ... antarctica genome (Kelley et al., 2014) using the Protein Pilot program (Sciex). Gel proteins were compared to those with differential expression in specific tissues from our RNA-seq studies ...
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bioRxiv - Biochemistry 2021Quote: ... The abundance of peptides and proteins were determined using PeakView 2.1 (SCIEX) as previously described [31,35,37] ...
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bioRxiv - Microbiology 2022Quote: ... protein isoforms and their modifications with ProteinPilot 4.5 Beta (AB Sciex, USA). Identification was done by using the UniProtKB based reference library of resistant strain A ...
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bioRxiv - Molecular Biology 2023Quote: ... Protein identification was then performed by the ProteinPilot software v.5.0 (Sciex). From each MS2 spectrum ...
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bioRxiv - Microbiology 2023Quote: ... Further data analysis was performed using the ProteinPilot Protein Alignment Template (SCIEX) (https://sciex.com/software-support/software-downloads).
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bioRxiv - Microbiology 2024Quote: ... The abundance of peptides and proteins were determined using PeakView 2.1 (SCIEX) as previously described 50,51 ...
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bioRxiv - Cell Biology 2019Quote: ... Protein peak areas were exported to Markerview (AB Sciex, Foster City, CA, USA) for further processing ...
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bioRxiv - Neuroscience 2020Quote: The mass spectrometry files were searched using Protein Pilot (AB SCIEX, Concord, Canada) and Mascot (Matrix Science Inc. ...
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bioRxiv - Neuroscience 2020Quote: ... Samples were input in the Protein Pilot software v4.2 (AB SCIEX, Concord, Canada), which employs the Paragon algorithm ...
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bioRxiv - Biochemistry 2020Quote: ... DDA protein identification was performed on a SCIEX TripleTOF 6600 (SCIEX, Framingham, MA) coupled to an Eksigent Ultra nanoLC system (Eksigent Technologies ...
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bioRxiv - Neuroscience 2022Quote: ... Representative peptides spectrum against each sample was identified using Protein Pilot (AB Sciex) and corresponding UBA52 interacting proteins were predicted using MASCOT and NCBInr database.
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bioRxiv - Microbiology 2022Quote: All raw files (.wiff) were searched in protein Pilot software (version 4.5; Sciex) with Mascot algorithm for protein identification and semi quantitation against Swiss-Prot_57.15 database (20,266 sequences after application of Homo sapiens taxonomy filter) ...
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bioRxiv - Genomics 2021Quote: ... the proteins were subjected to mass spectrometry analysis with a TripleTOF 6600 system (Sciex).
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bioRxiv - Genomics 2020Quote: Mass spectral data were analysed using Protein Pilot 4.5 Beta Software (July 2012; Sciex). MS/MS spectra were searched against the genomic proteins and the 6-frame translated data set constructed from the genomic assembly scaffolds using EMBOSS ...
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bioRxiv - Microbiology 2020Quote: ... Data files were submitted for simultaneous searches using Protein Pilot version 5.0 software (Sciex) utilizing the Paragon and Progroup algorithms and the integrated false discovery rate (FDR ...
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bioRxiv - Biochemistry 2022Quote: Data files were submitted for simultaneous searches using Protein Pilot version 5.0 software (Sciex) utilizing the Paragon and Progroup algortihms and the integrated false discovery rate (FDR ...
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bioRxiv - Neuroscience 2021Quote: ... Analysis of differentially expressed proteins was performed using the OneOmics cloud processing online platform (SCIEX) as described in the Appendix Extended methods.